Paper Chase is a research database designed to offer abstracts of research articles published in journals that have a highly rated impact factor as determined by ISI Impact Factor and PageRank. Abstracts are organized by date, with the most recently published papers listed first. 

Paper Chase

1.

GeNets: a unified web platform for network-based genomic analyses.

Nat. Methods.
Li T, Kim A, Rosenbluh J, Horn H, Greenfeld L, An D, Zimmer A, Liberzon A, Bistline J, Natoli T, Li Y, Tsherniak A, Narayan R, Subramanian A, Liefeld T, Wong B, Thompson D, Calvo S, Carr S, Boehm J, Jaffe J, Mesirov J, Hacohen N, Regev A, Lage K.
| Jun 18, 2018
2.

Discovery of proteins associated with a predefined genomic locus via dCas9-APEX-mediated proximity labeling.

Nat. Methods.
Myers SA, Wright J, Peckner R, Kalish BT, Zhang F, Carr SA.
| May 07, 2018
3.

Response to "Unexpected mutations after CRISPR-Cas9 editing in vivo".

Nat. Methods.
Lareau CA, Clement K, Hsu JY, Pattanayak V, Joung JK, Aryee MJ, Pinello L.
| 03 30, 2018
4.

Response to "Unexpected mutations after CRISPR-Cas9 editing in vivo".

Nat. Methods.
Wilson CJ, Fennell T, Bothmer A, Maeder ML, Reyon D, Cotta-Ramusino C, Fernandez CA, Marco E, Barrera LA, Jayaram H, Albright CF, Cox GF, Church GM, Myer VE.
| 03 30, 2018
5.

hichipper: a preprocessing pipeline for calling DNA loops from HiChIP data.

Nat. Methods.
Lareau CA, Aryee MJ.
| Feb 28, 2018
6.

NetSig: network-based discovery from cancer genomes.

Nat. Methods.
Horn H, Lawrence MS, Chouinard CR, Shrestha Y, Hu JX, Worstell E, Shea E, Ilic N, Kim E, Kamburov A, Kashani A, Hahn WC, Campbell JD, Boehm JS, Getz G, Lage K.
| 12 04, 2017
7.

Inducible and multiplex gene regulation using CRISPR-Cpf1-based transcription factors.

Nat. Methods.
Tak YE, Kleinstiver BP, Nuñez JK, Hsu JY, Horng JE, Gong J, Weissman JS, Joung JK.
| 10 30, 2017
8.

Deciphering lipid structures based on platform-independent decision rules.

Nat. Methods.
Hartler J, Triebl A, Ziegl A, Trötzmüller M, Rechberger GN, Zeleznik OA, Zierler KA, Torta F, Cazenave-Gassiot A, Wenk MR, Fauland A, Wheelock CE, Armando AM, Quehenberger O, Zhang Q, Wakelam MJO, Haemmerle G, Spener F, Köfeler HC, Thallinger GG.
| 10 23, 2017
9.

Antibodies to biotin enable large-scale detection of biotinylation sites on proteins.

Nat. Methods.
Udeshi ND, Pedram K, Svinkina T, Fereshetian S, Myers SA, Aygun O, Krug K, Clauser K, Ryan D, Ast T, Mootha VK, Ting AY, Carr SA.
| 10 16, 2017
10.

Pan-neuronal calcium imaging with cellular resolution in freely swimming zebrafish.

Nat. Methods.
Kim DH, Kim J, Marques JC, Grama A, Hildebrand DGC, Gu W, Li JM, Robson DN.
| 09 11, 2017
11.

Data-analysis strategies for image-based cell profiling.

Nat. Methods.
Caicedo JC, Cooper S, Heigwer F, Warchal S, Qiu P, Molnar C, Vasilevich AS, Barry JD, Bansal HS, Kraus O, Wawer M, Paavolainen L, Herrmann MD, Rohban M, Hung J, Hennig H, Concannon J, Smith I, Clemons PA, Singh S, Rees P, Horvath P, Linington RG, Carpenter AE.
| Aug 31, 2017
12.

Oscillatory stimuli differentiate adapting circuit topologies.

Nat. Methods.
Rahi SJ, Larsch J, Pecani K, Katsov AY, Mansouri N, Tsaneva-Atanasova K, Sontag ED, Cross FR.
| 08 28, 2017
13.

Comparison of algorithms for the detection of cancer drivers at subgene resolution.

Nat. Methods.
Porta-Pardo E, Kamburov A, Tamborero D, Pons T, Grases D, Valencia A, Lopez-Bigas N, Getz G, Godzik A.
| 07 17, 2017
14.

PIQED: automated identification and quantification of protein modifications from DIA-MS data.

Nat. Methods.
Meyer JG, Mukkamalla S, Steen H, Nesvizhskii AI, Gibson BW, Schilling B.
| Jun 29, 2017
15.

Genetically encoded fluorescent sensors reveal dynamic regulation of NADPH metabolism.

Nat. Methods.
Tao R, Zhao Y, Chu H, Wang A, Zhu J, Chen X, Zou Y, Shi M, Liu R, Su N, Du J, Zhou HM, Zhu L, Qian X, Liu H, Loscalzo J, Yang Y.
| 06 05, 2017
16.

CIRCLE-seq: a highly sensitive in vitro screen for genome-wide CRISPR-Cas9 nuclease off-targets.

Nat. Methods.
Tsai SQ, Nguyen NT, Malagon-Lopez J, Topkar VV, Aryee MJ, Joung JK.
| 05 01, 2017
17.

Genome-wide profiling of heritable and de novo STR variations.

Nat. Methods.
Willems T, Zielinski D, Yuan J, Gordon A, Gymrek M, Erlich Y.
| 04 24, 2017
18.

Salmon provides fast and bias-aware quantification of transcript expression.

Nat. Methods.
Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C.
| 03 06, 2017
19.

Correcting for cell-type heterogeneity in epigenome-wide association studies: revisiting previous analyses.

Nat. Methods.
Zheng SC, Beck S, Jaffe AE, Koestler DC, Hansen KD, Houseman AE, Irizarry RA, Teschendorff AE.
| 02 28, 2017
20.

Genetic screening enters the single-cell era.

Nat. Methods.
Wagner DE, Klein AM.
| 02 28, 2017

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