Paper Chase is a research database designed to offer abstracts of research articles published in journals that have a highly rated impact factor as determined by ISI Impact Factor and PageRank. Abstracts are organized by date, with the most recently published papers listed first. 

Paper Chase


GeNets: a unified web platform for network-based genomic analyses.

Nat. Methods.
Li T, Kim A, Rosenbluh J, Horn H, Greenfeld L, An D, Zimmer A, Liberzon A, Bistline J, Natoli T, Li Y, Tsherniak A, Narayan R, Subramanian A, Liefeld T, Wong B, Thompson D, Calvo S, Carr S, Boehm J, Jaffe J, Mesirov J, Hacohen N, Regev A, Lage K.
| Jun 18, 2018

Discovery of proteins associated with a predefined genomic locus via dCas9-APEX-mediated proximity labeling.

Nat. Methods.
Myers SA, Wright J, Peckner R, Kalish BT, Zhang F, Carr SA.
| May 07, 2018

Response to "Unexpected mutations after CRISPR-Cas9 editing in vivo".

Nat. Methods.
Lareau CA, Clement K, Hsu JY, Pattanayak V, Joung JK, Aryee MJ, Pinello L.
| 03 30, 2018

Response to "Unexpected mutations after CRISPR-Cas9 editing in vivo".

Nat. Methods.
Wilson CJ, Fennell T, Bothmer A, Maeder ML, Reyon D, Cotta-Ramusino C, Fernandez CA, Marco E, Barrera LA, Jayaram H, Albright CF, Cox GF, Church GM, Myer VE.
| 03 30, 2018

hichipper: a preprocessing pipeline for calling DNA loops from HiChIP data.

Nat. Methods.
Lareau CA, Aryee MJ.
| Feb 28, 2018

NetSig: network-based discovery from cancer genomes.

Nat. Methods.
Horn H, Lawrence MS, Chouinard CR, Shrestha Y, Hu JX, Worstell E, Shea E, Ilic N, Kim E, Kamburov A, Kashani A, Hahn WC, Campbell JD, Boehm JS, Getz G, Lage K.
| 12 04, 2017

Inducible and multiplex gene regulation using CRISPR-Cpf1-based transcription factors.

Nat. Methods.
Tak YE, Kleinstiver BP, Nuñez JK, Hsu JY, Horng JE, Gong J, Weissman JS, Joung JK.
| 10 30, 2017

Deciphering lipid structures based on platform-independent decision rules.

Nat. Methods.
Hartler J, Triebl A, Ziegl A, Trötzmüller M, Rechberger GN, Zeleznik OA, Zierler KA, Torta F, Cazenave-Gassiot A, Wenk MR, Fauland A, Wheelock CE, Armando AM, Quehenberger O, Zhang Q, Wakelam MJO, Haemmerle G, Spener F, Köfeler HC, Thallinger GG.
| 10 23, 2017

Antibodies to biotin enable large-scale detection of biotinylation sites on proteins.

Nat. Methods.
Udeshi ND, Pedram K, Svinkina T, Fereshetian S, Myers SA, Aygun O, Krug K, Clauser K, Ryan D, Ast T, Mootha VK, Ting AY, Carr SA.
| 10 16, 2017

Pan-neuronal calcium imaging with cellular resolution in freely swimming zebrafish.

Nat. Methods.
Kim DH, Kim J, Marques JC, Grama A, Hildebrand DGC, Gu W, Li JM, Robson DN.
| 09 11, 2017

Data-analysis strategies for image-based cell profiling.

Nat. Methods.
Caicedo JC, Cooper S, Heigwer F, Warchal S, Qiu P, Molnar C, Vasilevich AS, Barry JD, Bansal HS, Kraus O, Wawer M, Paavolainen L, Herrmann MD, Rohban M, Hung J, Hennig H, Concannon J, Smith I, Clemons PA, Singh S, Rees P, Horvath P, Linington RG, Carpenter AE.
| Aug 31, 2017

Oscillatory stimuli differentiate adapting circuit topologies.

Nat. Methods.
Rahi SJ, Larsch J, Pecani K, Katsov AY, Mansouri N, Tsaneva-Atanasova K, Sontag ED, Cross FR.
| 08 28, 2017

Comparison of algorithms for the detection of cancer drivers at subgene resolution.

Nat. Methods.
Porta-Pardo E, Kamburov A, Tamborero D, Pons T, Grases D, Valencia A, Lopez-Bigas N, Getz G, Godzik A.
| 07 17, 2017

PIQED: automated identification and quantification of protein modifications from DIA-MS data.

Nat. Methods.
Meyer JG, Mukkamalla S, Steen H, Nesvizhskii AI, Gibson BW, Schilling B.
| Jun 29, 2017

Genetically encoded fluorescent sensors reveal dynamic regulation of NADPH metabolism.

Nat. Methods.
Tao R, Zhao Y, Chu H, Wang A, Zhu J, Chen X, Zou Y, Shi M, Liu R, Su N, Du J, Zhou HM, Zhu L, Qian X, Liu H, Loscalzo J, Yang Y.
| 06 05, 2017

CIRCLE-seq: a highly sensitive in vitro screen for genome-wide CRISPR-Cas9 nuclease off-targets.

Nat. Methods.
Tsai SQ, Nguyen NT, Malagon-Lopez J, Topkar VV, Aryee MJ, Joung JK.
| 05 01, 2017

Genome-wide profiling of heritable and de novo STR variations.

Nat. Methods.
Willems T, Zielinski D, Yuan J, Gordon A, Gymrek M, Erlich Y.
| 04 24, 2017

Salmon provides fast and bias-aware quantification of transcript expression.

Nat. Methods.
Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C.
| 03 06, 2017

Correcting for cell-type heterogeneity in epigenome-wide association studies: revisiting previous analyses.

Nat. Methods.
Zheng SC, Beck S, Jaffe AE, Koestler DC, Hansen KD, Houseman AE, Irizarry RA, Teschendorff AE.
| 02 28, 2017

Genetic screening enters the single-cell era.

Nat. Methods.
Wagner DE, Klein AM.
| 02 28, 2017